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Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia.

Shlush, Liran I Zandi, Sasan Mitchell, Amanda Chen, Weihsu Claire Brandwein, Joseph M Gupta, Vikas Kennedy, James A Schimmer, Aaron D Schuh, Andre C Yee, Karen W ...

Published in Nature

In acute myeloid leukaemia (AML), the cell of origin, nature and biological consequences of initiating lesions, and order of subsequent mutations remain poorly understood, as AML is typically diagnosed without observation of a pre-leukaemic phase. Here, highly purified haematopoietic stem cells (HSCs), progenitor and mature cell fractions from the ...

A sequence-based variation map of 8.27 million SNPs in inbred mouse strains.

Kelly A. Frazer Eskin, E Kang, Hm Bogue, Ma Hinds, Da Beilharz, Ej Gupta, Rv Montgomery, J Morenzoni, Mm Nilsen, Gb ...

Published in Nature

A dense map of genetic variation in the laboratory mouse genome will provide insights into the evolutionary history of the species and lead to an improved understanding of the relationship between inter-strain genotypic and phenotypic differences. Here we resequence the genomes of four wild-derived and eleven classical strains. We identify 8.27 mil...

A second generation human haplotype map of over 3.1 million SNPs.

Muzny, D Nazareth, L Sodergren, E Weinstock, Gm Wheeler, Da Yakub, I Gabriel, Sb Onofrio, Rc Richter, Dj Ziaugra, L ...

Published in Nature

We describe the Phase II HapMap, which characterizes over 3.1 million human single nucleotide polymorphisms (SNPs) genotyped in 270 individuals from four geographically diverse populations and includes 25-35% of common SNP variation in the populations surveyed. The map is estimated to capture untyped common variation with an average maximum r2 of b...

Genome-wide detection and characterization of positive selection in human populations.

Clee, Cm Griffiths, M Jones, Mc Mclay, K Plumb, Rw Ross, Mt Sims, Sk Willey, Dl Chen, Z Han, H ...

Published in Nature

With the advent of dense maps of human genetic variation, it is now possible to detect positive natural selection across the human genome. Here we report an analysis of over 3 million polymorphisms from the International HapMap Project Phase 2 (HapMap2). We used long-range haplotype methods, which were developed to identify alleles segregating in...

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response.

Harismendy, Olivier Notani, Dimple Song, Xiaoyuan Rahim, Nazli G Tanasa, Bogdan Heintzman, Nathaniel Ren, Bing Fu, Xiang-Dong Topol, Eric J Rosenfeld, Michael G ...

Published in Nature

Genome-wide association studies have identified single nucleotide polymorphisms (SNPs) in the 9p21 gene desert associated with coronary artery disease (CAD) and type 2 diabetes. Despite evidence for a role of the associated interval in neighbouring gene regulation, the biological underpinnings of these genetic associations with CAD or type 2 diabet...

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